He Tan
Doctor of Philosophy
Change your information Boards, committees etc.
Research
Focus of my research is to explore synergies between semantic technologies and text mining techniques. My current research interests include,
- Text Mining: Ontological NLP, Text Learning
- Semantic Technologies: Semantic Data Integration, Semantic Modeling, Ontology Learning & Population, Ontology Alignment
- Life Sciences: Literature Mining, and applications to diseases Informatics
Biography
From 2003 to 2007 He Tan did PhD studies at Department of Computer and Information Science (IDA), Linköping University. In September 2007, She received her PhD from LiTH (the Institute of Technology), at Linköping University. From 2007 to 2011 Tan started work as Postdoctoral fellow at IDA, at Linköping University.
During 2010 She worked as a vising researcher at the Tsujii Laboratory, Department of Computer Science, University of Tokyo, Japan. Since January 2012 she is working as Assistant Professor in Information Engineering at the School of Engineering, Jönköping University.
Article
Hettiarachchi, H.
Dridi, A.
Gaber, M.
Parsafard, P.
Bocaneala, N.
Breitenfelder, K.
, ... Vakaj E.
(2025).
CODE-ACCORD: A Corpus of building regulatory data for rule generation towards automatic compliance checking Scientific Data, 12(1).
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Kebede, R., Moscati, A., Tan, H., Johansson, P.
(2024).
A modular ontology modeling approach to developing digital product passports to promote circular economy in the built environment Sustainable Production and Consumption, 48, 248-268.
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Li, Z., Tan, H., Jarfors, A., Jansson, P., Lattanzi, L.
(2024).
Smart-Cast: An AI-Based System for Semisolid Casting Process Control Procedia Computer Science, 232, 2440-2447.
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Li, Z., Tan, H., Jarfors, A., Steggo, J., Lattanzi, L., Jansson, P.
(2024).
On the potential of using ensemble learning algorithm to approach the partitioning coefficient (k) value in Scheil–Gulliver equation Materials Genome Engineering Advances, 2(3).
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Kebede, R., Moscati, A., Tan, H., Johansson, P.
(2022).
Integration of manufacturers' product data in BIM platforms using semantic web technologies Automation in Construction, 144.
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Tan, H., Tarasov, V., Jarfors, A., Seifeddine, S.
(2021).
A design of fuzzy inference systems to predict tensile properties of as-cast alloy The International Journal of Advanced Manufacturing Technology, 113(3-4), 1111-1123.
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Tarasov, V., Tan, H., Jarfors, A., Seifeddine, S.
(2020).
Fuzzy logic-based modelling of yield strength of as-cast A356 alloy Neural Computing & Applications, 32(10), 5833-5844.
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Tan, H., Tarasov, V., Jarfors, A., Seifeddine, S.
(2019).
Fuzzy Logic Based Modelling of Cast Component Properties IFAC-PapersOnLine, 52(13), 1132-1137.
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Lambrix, P., Tan, H.
(2007).
A Tool for Evaluating Ontology Alignment Strategies Journal on Data Semantics, VIII, 182-202.
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Strömbäck, L., Jakoniené, V., Tan, H., Lambrix, P.
(2006).
Representing, storing and accessing molecular interaction data: a review of models and tools Briefings in Bioinformatics, 7(4), 331-338.
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Lambrix, P., Tan, H.
(2006).
SAMBO - A System for Aligning and Merging Biomedical Ontologies Journal of Web Semantics, 4(3), 196-206.
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Doctoral thesis
Tan, H.
(2007).
Aligning Biomedical Ontologies
(Doctoral thesis, Linköping:
Institutionen för datavetenskap).
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Book chapter
Li, Z., Tan, H., Lattanzi, L., Jarfors, A., Jansson, P.
(2023).
On the Possibility of Replacing Scheil-Gulliver Modeling with Machine Learning and Neural Network Models.
In:
A. Pola, M. Tocci and A. Rassili
(Ed.),
Solid State Phenomena
(pp. 157 -163).
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Tarasov, V., Tan, H., Ismail, M., Adlemo, A., Johansson, M.
(2017).
Application of inference rules to a software requirements ontology to generate software test cases.
In:
Dragoni, Mauro; Poveda-Villalón, María; Jimenez-Ruiz, Ernesto
(Ed.),
OWL: Experiences and Directions – Reasoner Evaluation:
13th International Workshop, OWLED 2016, and 5th International Workshop, ORE 2016, Bologna, Italy, November 20, 2016, Revised Selected Papers
(pp. 82 -94).
Cham: Springer
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Tan, H.
(2012).
Semantic Role Labeling for Biological Event.
In:
Patrick Lambrix
(Ed.),
Advances in Secure and Networked Information Systems - The ADIT Perspective:
Festschrift in honor of professor Nahid Shahmehri
(pp. 165 -174).
Linköping: Linköping University Electronic Press
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Lambrix, P., Strömbäck, L., Tan, H.
(2009).
Information integration in bioinformatics with ontologies and standards.
In:
Semantic Techniques for the Web:
The REWERSE perspective
(pp. 343 -376).
Berlin: Springer
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Lambrix, P., Tan, H.
(2008).
Ontology alignment and merging.
In:
Anatomy Ontologies for Bioinformatics:
Principles and Practice
(pp. 133 -150).
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Lambrix, P., Tan, H., Jakoniené, V., Strömbäck, L.
(2007).
Biological Ontologies.
In:
Semantic Web:
Revolutionizing Knowledge Discovery in the Life Sciences
(pp. 85 -99).
Berlin: Springer
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Lambrix, P., Tan, H.
(2005).
Merging DAML+OIL Ontologies.
In:
Databases and Information Systems (Selected Papers from the Sixth International Baltic Conference DB&IS'2004)
(pp. 249 -258).
Amsterdam: IOS Press
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Conference paper
Tan, H., Westphal, F.
(2024).
A Semantic Representation of Pedestrian Crossing Behavior.
Joint of the ESWC 2024 Workshops and Tutorials, ESWC-JP 2024 Hersonissos 26 May 2024 through 27 May 2024.
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Tan, H., Kebede, R., Moscati, A., Johansson, P.
(2024).
Semantic interoperability using ontologies and standards for building product properties.
12th Linked Data in Architecture and Construction Workshop, Bochum, Germany, June 13-14, 2024.
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Kebede, R., Moscati, A., Tan, H., Johansson, P.
(2023).
Circular economy in the built environment: a framework for implementing digital product passports with knowledge graphs.
2023 European Conference on Computing in Construction and the 40th International CIB W78 Conference, Crete, Greece, 10-12 July, 2023.
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Li, Z., Tan, H., Jarfors, A., Lattanzi, L., Jansson, P.
(2023).
Enhancing Rheocasting Process Control with AI-based Systems.
The 35th Swedish Artificial Intelligence Society (SAIS'23) annual workshop.
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Li, Z., Tan, H., Lattanzi, L., Jarfors, A., Jansson, P.
(2023).
On the possibility of replacing Scheil-Gulliver modelling with machine learning and neural network models.
17th International Conference on Semi Solid Processing of Alloys and Composites (S2P2023), 6-8 September 2023, Brescia, Italy.
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Tan, H., Tarasov, V., Fourlakidis, V., Diószegi, A.
(2020).
Data-driven modeling of mechanical properties of cast iron using fuzzy logic.
Amsterdam:
IOS Press, 6th International Conference on Fuzzy Systems and Data Mining (FSDM 2020), 13-16 November 2020, Xiamen, China.
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Tarasov, V., Tan, H., Adlemo, A.
(2019).
Automation of software testing process using ontologies.
11th International Joint Conference on Knowledge Discovery, Knowledge Engineering and Knowledge Management, September 17-19, 2019, Vienna, Austria.
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Tan, H., Tarasov, V., Adlemo, A.
(2019).
Lessons Learned from an Application of Ontologies in Software Testing.
JOWO 2019, The Joint Ontology Workshops, Graz, Austria, September 23-25, 2019..
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Adlemo, A., Tan, H., Tarasov, V.
(2018).
Test case quality as perceived in Sweden.
2018 ACM/IEEE 5th International Workshop on Requirements Engineering and Testing, Gothenburg, Sweden, June 02, 2018.
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Tan, H., Adlemo, A., Tarasov, V., Johansson, M.
(2017).
Evaluation of an Application Ontology.
Proceedings of the Joint Ontology Workshops 2017 Episode 3: The Tyrolean Autumn of Ontology Bozen-Bolzano, Italy, September 21–23, 2017.
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Tan, H., Ismail, M., Tarasov, V., Adlemo, A., Johansson, M.
(2016).
Development and evaluation of a software requirements ontology.
7th International Workshop on Software Knowledge - SKY 2016 in conjunction with the 9th International Joint Conference on Knowledge Discovery, Knowledge Engineering and Knowledge Management - IC3K 2016, November 9-10, 2016, in Porto, Portugal.
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Resmini, A., Tan, H., Tarasov, V., Adlemo, A.
(2016).
#ViewFromTheOffice - Reconceptualizing the Workplace as an Information-based Ecosystem.
6th STS Conference on Socio-technical Ecosystems.
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Tan, H., Barakat, G., Tarasov, V.
(2015).
Translating XML Models into OWL Ontologies for Interoperability of Simulation Systems.
3rd Workshop on Ontologies and Information Systems (WOIS 2015), Tartu, Estonia, August 26, 2015.
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Tarasov, V., Tan, H., Adlemo, A., Ismail, M., Mats, J., Olsson, D.
(2015).
Ontology-based Software Test Case Generation (OSTAG).
European Projects in Knowledge Applications and Intelligent Systems, July 20-23, 2016, Lisbon, Portugal.
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Tan, H., Resmini, A., Tarasov, V., Adlemo, A.
(2015).
Workplace innovation in Swedish local organizations - technology aspect: BIS 2015 International Workshops, Poznań, Poland, June 24-26, 2015, Revised Papers.
18th International Workshop on Business Information Systems (BIS), June 24-26, 2015, Poznan, Poland.
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Tan, H.
(2014).
A Method for Building FrameNet-like Corpus for the Biomedical Domain.
14th Conference of the European Chapter of the Association for Computational Linguistics.
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Tan, H., Kaliyaperumal, R., Benis, N.
(2012).
Ontology-driven Construction of Corpus with Frame Semantics Annotations.
13th International Conference, CICLing 2012, New Delhi, India, March 11-17, 2012.
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Tan, H., Chowdari, S.
(2012).
Semantic Role Labeling for Biological Transport.
AAAI 2012 Fall Symposium on Information Retrieval and Knowledge Discovery in Biomedical Text.
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Tan, H., Kaliyaperumal, R., Benis, N.
(2011).
Building frame-based corpus on the basis of ontological domain knowledge.
BioNLP 2011, 23-24 June, 2011, Portland, Oregon, USA.
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Tan, H., Kaliyaperumal, R., Benis, N.
(2011).
Ontology-driven Construction of Corpus with Frame Semantics Annotations.
The Fourth International Symposium on Languages in Biology and Medicine.
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Tan, H.
(2010).
A study on the relation between linguistics-oriented and domain-specific semantics.
3rd International Workshop on Semantic Web Applications and Tools for the Life Sciences.
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Lambrix, P., Liu, Q., Tan, H.
(2009).
Repairing the missing is-a structure of ontologies.
4th Asian Semantic Web Conference - ASWC09.
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Lambrix, P., Liu, Q., Tan, H.
(2009).
A system for repairing missing is-a structure in ontologies.
SWAT4LS 2009: Amsterdam, The Netherlands.
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Tan, H., Lambrix, P.
(2009).
Selecting an ontology for biomedical text mining.
BioNLP 2009, June 4-5, Boulder, Colorado.
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Lambrix, P., Liu, Q., Tan, H.
(2009).
RepOSE: an environment for repairing missing ontological structure.
4th Asian Semantic Web Conference.
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Lambrix, P., Liu, Q., Tan, H.
(2009).
Aligning anatomy ontologies in the Ontology Alignment Evaluation Initiative.
25th Annual Workshop of the Swedish Artificial Intelligence Society.
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Tan, H., Lambrix, P.
(2009).
Selecting an ontology for biomedical text mining.
17th Conference on Intelligent Systems for Molecular Biology, June 27 to July 2, 2009, Stockholm, Sweden.
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Lambrix, P., Tan, H., Liu, Q.
(2008).
SAMBO and SAMBOdtf results for the Ontology Alignment Evaluation Initiative 2008.
The Third International Workshop on Ontology Matching collocated with the 7th International Semantic Web Conference, October 26 – 30, 2008, Karlsruhe, Germany.
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Tan, H.
(2008).
Knowledge-based gene symbol disambiguation.
Second International Workshop on Data and Text Mining in Bioinformatics, 2008, DTMBIO '08.
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Lambrix, P., Tan, H., Xu, W.
(2008).
Literature-based alignment of ontologies.
The Third International Workshop on Ontology Matching collocated with the 7th International Semantic Web Conference, October 26 – 30, 2008, Karlsruhe, Germany.
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Tan, H., Lambrix, P.
(2007).
A method for recommending ontology alignment strategies.
International Semantic Web Conference.
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Tan, H., Lambrix, P.
(2007).
SAMBO results for the Ontology Alignment Evaluation Initiative 2007.
The Second International Workshop on Ontology Matching collocated with the 6th International Semantic Web Conference (ISWC-2007), November 11, 2007: BEXCO, Busan, Korea.
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Lambrix, P., Tan, H.
(2007).
Aligning Biomedical Ontologies.
International Workshop, Integrative Bioinformatics, 4th annual meeting, 10th to 12th September, 2007, University of Ghent, Belgium.
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Wächter, T., Tan, H., Wobst, A., Lambrix, P., Schroeder, M.
(2006).
A Corpus-driven Approach for Design, Evolution and Alignment of Ontologies.
Winter Simulation Conference, 3-6 Dec., 2006.
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Tan, H., Lambrix, P.
(2006).
Aligning and merging biomedical ontologies.
Seventh Swedish Bioinformatics Workshop for PhD students and PostDocs, Stockholm, November 24-25, 2006.
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Tan, H., Jakoniené, V., Lambrix, P., Åberg, J., Shahmehri, N.
(2006).
Alignment of Biomedical Ontologies using Life Science Literature.
International Workshop on Knowledge Discovery in Life Science Literature 2006 (KDLL 2006).
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Chen, B., Tan, H., Lambrix, P.
(2006).
Structure-Based Filtering for Ontology Alignment.
15th IEEE WETICE Workshop on Semantic Technologies in Collaborative Applications.
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Lambrix, P., Tan, H.
(2005).
A Framework for Aligning Ontologies.
Third International Workshop, PPSWR 2005, Dagstuhl Castle, Germany, September 11-16, 2005.
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Lambrix, P., Tan, H.
(2004).
A semi-automatic tool for merging bio-ontologies.
Fourth Swedish Bioinformatics Workshop for PhD students and PostDocs.
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Lambrix, P., Tan, H.
(2004).
Merging DAML+OIL Ontologies.
Sixth International Baltic Conference on Databases and Information Systems, Riga, Latvia, 2004.
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Lambrix, P., Tan, H.
(2004).
A Semi-Automatic Tool for Merging Bio-Ontologies.
Bioinformatics 2004, Linköping, Sweden.
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Lambrix, P., Edberg, A., Manis, C., Tan, H.
(2003).
Merging DAML+OIL bio-ontologies.
2003 International Workshop on Description Logics (DL2003).
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Lambrix, P., Tan, H.
(2003).
A semi-automatic tool for merging bio-ontologies.
3rd Swedish annual bioinformatics workshop for PhD students and PostDocs.
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Other publications
Li, Z., Tan, H., Westphal, F., Jarfors, A., Jansson, P., Lattanzi, L.
.
The challenges and opportunities for automated phase fraction analysis: A case study of color etching cast aluminium.
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Conference proceedings (editor)
Sales, T., Hedblom, M., Tan, H. (Eds.).
(2022).
Proceedings of the Joint Ontology Workshops 2022, Episode VIII: The Svear Sommar of Ontology.
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Report
Backofen, R.
Burger, A.
Busch, A.
Dawelbait, G.
Fages, F.
Jakoniené, V.
, ... Will S.
(2007).
Implementation of prototypes.
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Backofen, R.
Badea, L.
Barahona, P.
Berndtsson, M.
Burger, A.
Dawelbait, G.
, ... Will S.
(2005).
Requirements and specification of bioinformatics use cases.
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Backofen, R.
Mike, B.
Barahona, P.
Burger, A.
Dawelbait, G.
Doms, A.
, ... Will S.
(2005).
Usage of bioinformatics tools and identification of information sources.
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Licentiate thesis
Tan, H.
(2006).
Aligning and Merging Biomedical Ontologies
(Licentiate thesis, Linköping:
Institutionen för datavetenskap).
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